Porphyra pupurea LSU.I1

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgat tcgttgctag

2221 taagaaaaga tatgtacttt tcgtaaatag ctagtactaa tattattttg gtgttaaact

2281 aacactacag ataggaagct aggtcaaact agtgggccta tgcatcaact ccaggtgctg

2341 atcaatgagc tgcagttacg cgcagtgaac cctataagct gtatcaatag taaatacgga

2401 ttataagcag ggcataaatc tatatttcac taacttatag agtgacaaat atagaaagaa

2461 tacttatttt agtaaatcta ccaagaaaag ccaataatgt cgattattac ttaaatatat

2521 tctaatattt aaatccgcaa taaaattccc taaaccgagg atagtggggg acaattataa

2581 gtgatatacc ccattaacac gaaatagcgt gaattctaaa cataaggtat ggtttaatta

2641 cgacgtttaa accggagtgc cagttttaga gggaatagag gggcttacta aataagtgta

2701 tgtagtgttg gaacgaagta actgtgattg tagaccaaaa tatttttgtc taaaatacat

2761 tgggcgcata ctattgtgtc aatatgcaat cacggcagga ttctataaga agctaaagcc

2821 gtagggaaag cctattggat acgctgacgt atagacaagc catattaatt tgaattgacc

2881 tttgaaaata tacaaataca gacctaaaat gatgaaatgg aataacatta tctgaaaaaa

2941 taaagaaatt tgattgtata aattgcaaag acaaatattt aatctaagta aaatgggtga

3001 tatggagaaa gtttttttca tacaaaaaca gctcataaag catgaaaatg caaatttttt

3061 agccgttagg aaagtgacac aggacaacct gggaaaacga accgcgggag tagataaaat

3121 ttcctcgttg acgccagacg aaagaatgga gttagtaaga aatatacacg ttgatcaaaa

3181 ttcggataag attctaagag taacaatccc aaaaccgaat ggttctgtaa gaaatctagg

3241 tatacccact ataagagatc gtgctaagca atgtcttgtc aaatttgcac tcgagccgca

3301 gtatgaagca atttttgaac ctaacagtta cgggtttcga cctggtagaa gcgctaacga

3361 cgcgagaaag gctattgtaa agtgtttaca aagaaaacct aaacatatat tagatgcgga

3421 tatcaaaggc tgctttgaca acattgatca ctccaagtta cttgaaaagc tgaatacgtt

3481 tcccctattc agaaaccaaa ttaacacttg attaaaagta ggggtactga gcgattttca

3541 aggaaataaa actgaaatta tccctcaatc tggaactcca caaggaggta caatatcacc

3601 tttgctagca aacatcgctt tacatggaat agaaaagttg gtgagtaaaa gaggagtata

3661 tcttattaga tacgcggatg attttctagt tctatgtaat gaggagaagg agttattaga

3721 agccaagcaa aagatagaag tttttctaaa aactataggt ttagaatttt ctgcagaaaa

3781 gactaaaata acatatagcg catattcttc cccaaagaag tctagcggta tagatttctt

3841 aggtttcaac ttcgtcaact acaaagtggg caaacataaa gcctccaaag atagtcatgg

3901 aaaattaacc gattgaatgt ctaggtgtca acctagtata aaatcgattg acagacatct

3961 taaggatatc aaaagtatct tgaagaagtc cagtggtata tcccaaaaag tcttaatcag

4021 taaattagca cctgttatta acggatggac tagatatttt gcagtatgca atgcaacgaa

4081 aactttcagc ttttgcagta tgcgtacatt ttatcttcta aaaacctgat ctcaaaagaa

4141 gagtcggtct ggaactaaag tgtctaaaca ctgaattaaa gtcgatgaag ctaactgagt

4201 atttggcctg atagaaaacg atgaagtaat aaaattgaaa agacatgatc aaaccaatat

4261 aattatatct actaaagtgt caaaagaggg tagtccgtat gatggtaaag ttacatactg

4321 gtctaaaaga ttatcatcaa gtaataagta cggatctctc ttaaggacac ttttaaaaat

4381 gaaaggacca aaatgtgata tgtgcaggat ttattttaac gattccgata gaatagagat

4441 agaccatatt acaccaagaa atcaaggagg aacctcacac tgagataatc taagattact

4501 gcatggacat tgtcatgaca cgcgtcattc caaaaatgat taacgagatt attttgtgtc

4561 aagataacaa ttttacttaa caacaaattg atgttgataa tatgacttga ggagccgtat

4621 gaagggtgac tttcacgtac ggttttgaag tggaaggtat tctcgtgaga gaagacttga

4681 ccataac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

cgtcacg actaccccac tgtctctagt ataggctcag

1741 cgaaattaca ttgtctgtga aaatgcagac atcctgcaac aagacggaaa gaccctatga

1801 ttctttacta taattttaca tcgtaatagt tttatctata gtacagtaaa agtagaagca

1861 tattcatgct attttgaaaa actactctgc agataaaaaa ttacttacta atcagaaaat

1921 atgtaaaagt ggtagtttac ttgggacgag gacctcctaa agtgtaacgg aggtgcacaa

1981 aggtgaactt taattagcaa aatatgctag tacaaagcgt aatggtaaaa gttcgcttga

2041 cggtaagagt tacagctcaa accgagacga aagtcggtca taatgatccg gtagtaatgt

2101 atggaaatac tgccgcttat cggaaaaaag aaactctagg gataacagat ttatcatggt

2161 tgagagttct tatcgatgcc atggtttgat acctcgatgt cgggtgcgat tcgttgctag