Rhizphydium sp.136 cox1.I1

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Information of Rhizphydium sp.136 cox1.I11 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

36301 tgcgacattt cattttatat acccttgagt gtaaatactc cttcacaatt aaaattaaat

36361 aaatttaata atttgatata taaaaaatat cataataata taaaaactga tcatcaatta

36421 acttagtgga ataaacccct aggattaact tcaatgtata ataaatctaa attaactaaa

36481 ttagaattaa ctaatatagg tataacacct agacaaagaa gtattataat aggaatttag

36541 ctttcagatg gttggatgca atctcgtaaa ggttggaatc cacgtatagc aataaaacaa

36601 tctgttaaaa attttaatta tttatggtca atttttgaag aattagcttc tttatgttct

36661 atttatccat atccttctaa aaatttaaag agaggtaaat tattttactc attaacttta

36721 caaactagac aattaaaaag tttattatta attagatctt tattatatac tgaagttagt

36781 aaaaatctat ttgaacgaga tattcaattt gaattatttt attatttaga ttatatttct

36841 ttagctcatt ggataaaggg agatggtgct aaacataata atggaattgt attatgtaca

36901 gatagtttta cggtaaaaga agttgtattt ttaatgaata tattatatat taaatttgat

36961 atacaacctc gtaagcatat gaataataat tattatcctc gtctttctat ttctaaaaaa

37021 gatatgttaa aaattagacc cttaattaga ccctatttta ttaatcattt tttatacaaa

37081 atttatttat gaagtaaaac attttactta ggtagaatcc gccaaggatt cactgacaac

37141 agcatgtaaa aaaaggggat taattaactt ctatggagtt tttaggtcat cctcgagtta

37201 agtcccttat ggtaaggata acgaacctat ataaaaaata ttcgtaatta atatggatta

37261 tgtaagtagc agagcataat taattttaat catattaatt ggacttttgt ctagaatttt

37321 taggtaccta acagggaata tatggggtat ataagagaac ttgtgattac ccgaaaggtg

37381 gaaatctggg ggtaacggaa tttccgtagt aggcgcctta taattaataa ttaaggggcc

37441 attagttaat agctaaggct tattatactt gatcaaattt tattgacttg ttagccgaag

37501 ggaaatagga gatattaatg gtaaagataa tatctctgga gagccgtatg cttggaaact

37561 tgcacgtact ggttcgggaa aggtttttag actaatggga taactggggt ctaactacta

37621 tttcac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

t gagtatttta atacctttat

35821 tttattcttt aagacctttt tttttatctc gtaaacaaat tgattttgat agatttttta

35881 tagtagttca aggaaaagct aataattagc ttaaattaga aaatggtaaa gatatattaa

35941 tgcgtgtagc agaaaatact aataataatc gttattccac ttttaaaggt aaaaatattt

36001 ttttattacc aactcaaaaa gagattgata tgttattttt agatttaatt aataggggat

36061 cattaaaaag ttgtggaggg agggacactt ttttttttca taaatgtaag ctcatagagc

36121 tggagtagat tctgatagtt taaattatga taatattaaa aaatagtcct tttaaaaatt

36181 tttacatcat ataaataatc atttattttt aattatcgta taaatttttt atattattag

36241 caccacatgt accttgtcgg attagatatt gattctagag catattttac tgctgctacg