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Information of Rhizphydium sp.136  cox1.I11 intron   (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

 

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts 

off all of the exon-encoded and some of the intron-encoded polypeptide. This 

situation is indicated here by blue-coded ORF that extends to the start of 

the intron rather than by a translation start approximately 500 bp after the 

start of the intron.

3' end

                                                                      g 

36301 tgcgacattt cattttatat acccttgagt gtaaatactc cttcacaatt aaaattaaat 

36361 aaatttaata atttgatata taaaaaatat cataataata taaaaactga tcatcaatta 

36421 acttagtgga ataaacccct aggattaact tcaatgtata ataaatctaa attaactaaa 

36481 ttagaattaa ctaatatagg tataacacct agacaaagaa gtattataat aggaatttag 

36541 ctttcagatg gttggatgca atctcgtaaa ggttggaatc cacgtatagc aataaaacaa 

36601 tctgttaaaa attttaatta tttatggtca atttttgaag aattagcttc tttatgttct 

36661 atttatccat atccttctaa aaatttaaag agaggtaaat tattttactc attaacttta 

36721 caaactagac aattaaaaag tttattatta attagatctt tattatatac tgaagttagt 

36781 aaaaatctat ttgaacgaga tattcaattt gaattatttt attatttaga ttatatttct 

36841 ttagctcatt ggataaaggg agatggtgct aaacataata atggaattgt attatgtaca 

36901 gatagtttta cggtaaaaga agttgtattt ttaatgaata tattatatat taaatttgat 

36961 atacaacctc gtaagcatat gaataataat tattatcctc gtctttctat ttctaaaaaa 

37021 gatatgttaa aaattagacc cttaattaga ccctatttta ttaatcattt tttatacaaa 

37081 atttatttat gaagtaaaac attttactta ggtagaatcc gccaaggatt cactgacaac 

37141 agcatgtaaa aaaaggggat taattaactt ctatggagtt tttaggtcat cctcgagtta 

37201 agtcccttat ggtaaggata acgaacctat ataaaaaata ttcgtaatta atatggatta 

37261 tgtaagtagc agagcataat taattttaat catattaatt ggacttttgt ctagaatttt 

37321 taggtaccta acagggaata tatggggtat ataagagaac ttgtgattac ccgaaaggtg 

37381 gaaatctggg ggtaacggaa tttccgtagt aggcgcctta taattaataa ttaaggggcc 

37441 attagttaat agctaaggct tattatactt gatcaaattt tattgacttg ttagccgaag 

37501 ggaaatagga gatattaatg gtaaagataa tatctctgga gagccgtatg cttggaaact 

37561 tgcacgtact ggttcgggaa aggtttttag actaatggga taactggggt ctaactacta 

37621 tttcac

 

                                                                   

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[intron& flanking sequence]

 

Genbank entry, intron is marked as red

 

                                                t gagtatttta atacctttat 

35821 tttattcttt aagacctttt tttttatctc gtaaacaaat tgattttgat agatttttta 

35881 tagtagttca aggaaaagct aataattagc ttaaattaga aaatggtaaa gatatattaa 

35941 tgcgtgtagc agaaaatact aataataatc gttattccac ttttaaaggt aaaaatattt 

36001 ttttattacc aactcaaaaa gagattgata tgttattttt agatttaatt aataggggat 

36061 cattaaaaag ttgtggaggg agggacactt ttttttttca taaatgtaag ctcatagagc 

36121 tggagtagat tctgatagtt taaattatga taatattaaa aaatagtcct tttaaaaatt 

36181 tttacatcat ataaataatc atttattttt aattatcgta taaatttttt atattattag 

36241 caccacatgt accttgtcgg attagatatt gattctagag catattttac tgctgctac

36301 tgcgacattt cattttatat acccttgagt gtaaatactc cttcacaatt aaaattaaat 

36361 aaatttaata atttgatata taaaaaatat cataataata taaaaactga tcatcaatta 

36421 acttagtgga ataaacccct aggattaact tcaatgtata ataaatctaa attaactaaa 

36481 ttagaattaa ctaatatagg tataacacct agacaaagaa gtattataat aggaatttag 

36541 ctttcagatg gttggatgca atctcgtaaa ggttggaatc cacgtatagc aataaaacaa 

36601 tctgttaaaa attttaatta tttatggtca atttttgaag aattagcttc tttatgttct 

36661 atttatccat atccttctaa aaatttaaag agaggtaaat tattttactc attaacttta 

36721 caaactagac aattaaaaag tttattatta attagatctt tattatatac tgaagttagt 

36781 aaaaatctat ttgaacgaga tattcaattt gaattatttt attatttaga ttatatttct 

36841 ttagctcatt ggataaaggg agatggtgct aaacataata atggaattgt attatgtaca 

36901 gatagtttta cggtaaaaga agttgtattt ttaatgaata tattatatat taaatttgat 

36961 atacaacctc gtaagcatat gaataataat tattatcctc gtctttctat ttctaaaaaa 

37021 gatatgttaa aaattagacc cttaattaga ccctatttta ttaatcattt tttatacaaa 

37081 atttatttat gaagtaaaac attttactta ggtagaatcc gccaaggatt cactgacaac 

37141 agcatgtaaa aaaaggggat taattaactt ctatggagtt tttaggtcat cctcgagtta 

37201 agtcccttat ggtaaggata acgaacctat ataaaaaata ttcgtaatta atatggatta 

37261 tgtaagtagc agagcataat taattttaat catattaatt ggacttttgt ctagaatttt 

37321 taggtaccta acagggaata tatggggtat ataagagaac ttgtgattac ccgaaaggtg 

37381 gaaatctggg ggtaacggaa tttccgtagt aggcgcctta taattaataa ttaaggggcc 

37441 attagttaat agctaaggct tattatactt gatcaaattt tattgacttg ttagccgaag 

37501 ggaaatagga gatattaatg gtaaagataa tatctctgga gagccgtatg cttggaaact 

37561 tgcacgtact ggttcgggaa aggtttttag actaatggga taactggggt ctaactacta 

37621 tttcacaatt attattgctt tacctacagg tgtaaaagta tttagttgga ttgctactat 

37681 ttatggtggt aaagttcatt atactgtacc tatggtattt gctttaggat aaaaatggat 

37741 cctaataaaa ttttgtaatt taccggtaaa ataaattatt atcagtaaga aatcaagtta 

37801 gtcttgattt tttcagagac taaatacaaa attaacttta aaaaaaaggt tagatgagat 

37861 agtcccaaat aattaactta attatttttt taattgttat cttaaaaaaa tttcagctgc 

37921 tgctaaactt tatatgaact ggtagaatag taagtgatag tacaaaatta aaaattagta 

37981 aacctattta tgtgtataat gcagatacta aaattctttt atattccttt aaaggagttg 

38041 ttgaagctaa aaatacatta aaagtttcta gtttaactta gcataaatac tctaaattag 

38101 gtaatcctta aaaattaaaa ttatta

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[ORF sequence]

 

263 a.a.

 

CDISFYIPLSVNTPSQLKLNKFNNLIYKKYHNNIKTDHQLTLWNKPLGLTSMYNKSKL

TKLELTNIGITPRQRSIIIGILLSDGWMQSRKGWNPRIAIKQSVKNFNYLWSIFEELA

SLCSIYPYPSKNLKRGKLFYSLTLQTRQLKSLLLIRSLLYTEVSKNLFERDIQFELFY

YLDYISLAHWIKGDGAKHNNGIVLCTDSFTVKEVVFLMNILYIKFDIQPRKHMNNNYY

PRLSISKKDMLKIRPLIRPYFINHFLYKIYL

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[secondary structure]

 not available

 

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