Rhodomonas salina cox1.I1

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Information of Rhodomonas salina cox1.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtg cgctagttgt agttagatgt

34861 agaattatct gagaacgata atagctctat tgggagagtt aaacccgagt gtttaatcgg

34921 aaaaaataaa gacacagata aacgaagtaa atgttggtga aaaccttacg agaacaaagc

34981 atgacacttt aaaaatgact gcccaaatca tagcggcaag ttaacgggga aagtagttca

35041 gggataagtt tttaacctaa tgtataagtc agttggtgga ttcatgacac gaagcgagag

35101 agcggatcct tacccgaaaa agttaagaaa gaagtgactt ttttcccaat cattgtggaa

35161 aggacaacga taggcaggtt ctttgaacat tggccaaaaa tatctacctc gaaagaggat

35221 gactttagta caacccaacg ctacaatata tacatctaat aaaaaatcta gtggctcact

35281 aaagttcacc tacaaattct tagtaaacta aaaggtttgt aggtaatcaa gtgaggcgag

35341 ctgttaatag acagcagtcg taagatataa gacgagctta tttagacgtt ggtgatgacg

35401 tcctaataaa taagtaacat ttttaaaaaa ctaaacaaaa gaaaaagata tgaaagagac

35461 atacaaagaa tacaaaaaaa gaagaggaac aatttttgac aaactaaaaa aattatatga

35521 actaaataaa gaaaatacaa ataaaagtaa cgataattta atgaaatttt tatacgatga

35581 aggtatgtta tggaatgctg tagaaaaatt aaaaaagaac aaaggagcag ccacctttgg

35641 tccaacaaac aataaagaca gaaaaagcat cgagatagat ggtctaaatt taggccaaat

35701 aaaaaggctg agcgaagagc tgagagaaga gacatttaaa tggtccccaa ccagaagaat

35761 agaagtccca aagaaaaaca ataaaagaag accgttgggc atttttagtt ttgaagacag

35821 aatagtgcaa gaaggaatca ggacaatttt aaatgcaata tatgaaccta ctttcagtgg

35881 aaataacaat catggtttta gacctaggct aagtagtgaa acggccttgg agttactaaa

35941 aagaaataga aaaggaaaaa cacatgccat agaaggggat atcaaaaagg cgtacgaagg

36001 catcaatcac aatatactca tgaaaatact aaagaaaaaa ataaacgata aaaagttctt

36061 aagaataata gaagaaggac taaaatgtgg aattgaaaaa aaccgcaaaa tatataacag

36121 tataactgta gtaccacaag gttccatctg tagtccgata cttttcaata tatacatgaa

36181 tgaattcgat gaagcgatta aaacaatcat agaagaaata ttcacgagac taaatgagag

36241 cagagactca agaaaaagtt caagtacaat gaacaaagaa tacaagatac ttaagagtag

36301 atcagatgaa atgaacaaga aaataagaga aagattaaaa caagagagtc ctttcataaa

36361 aacactactc aaaagtcaca aaaaaataag atggaaacta aaaaggaaga aagccataga

36421 ctatggaaaa agaactttgg agtacttcta cctcagatat gcagatgatt ggataatcat

36481 aacaaatgga aatgttcgtg tatgtgaaga aatcaagata agaatatcca cttggataaa

36541 agaagaactg aaattagaat tagaacagag caaaacaaga attacaaata tggagaagga

36601 tccaataaag tttctgggat tcagcataat gacgcccatt aacacaagaa taggcacaat

36661 agaaaaaaag ataggaataa gaacaacgag aagaaccaat ttgggaccca gaataggacc

36721 agattatgaa agaattatag aaagattaat agaaagaaaa ttcgtaaacg aaaagagaca

36781 gccgatacag gtgtctagaa tggtagatta caaacccttt gaaatagtaa cacaatttaa

36841 tttaattata agaggattgt tcggatacta ttatcaatca atagaccaaa aatcaagatt

36901 aaataggtta tattatctaa taaaatactc gtgctataaa acgttagcag caagatacaa

36961 gtcctcaata agaaaggtaa tttctaggca tggcccgaac atggaaataa gagaaaagaa

37021 gatccaagta aattttcctt cttatggaaa acttatgagt gaattcggaa aaagaaccat

37081 taagagatgg aaagagatag acagattact cacaaaatcc gttctgaaaa tagatgaaaa

37141 aacacatttg gaactagacc cattctcacc gaagataaac cttagaacag gatataagct

37201 ggaaaagcag tgtctcgtat gcggagcgga agctacctca aataacagac tcgaaaccca

37261 ccacgtaaac gaaatcaaaa acaagacggt gagagggttt agcgaaataa tgtaatcatt

37321 gaatagaaaa acggttatgg tatgcaaaac atgtcacaac aaaatacaca gaggtagaca

37381 tggcgaagtc tttttaaaag atattatgaa gggacaactc caggattaaa agaaatatat

37441 atatatatat ttttttttag agaaactatg tttgtttcaa tcataataag aacaaaaatt

37501 cttcgtagta taacatgcgt tagtatatat gttcaaacga agatgtcctt aataaacaaa

37561 aagatagaat tataaatact agatttaatt ttttgtaatt aagactattc gtgaatgtta

37621 tatatttgat agtggttcac aacgtgttat tagacaatta aaccgtgatt gtttcctata

37681 tgaggcggat gttagttata tacttaataa ctttaagcat ttgagttata atgatgctat

37741 tagcgatagg gagtttagag atatcgtaaa aaaatattca aaccaattat tgtagattcc

37801 tctagcccta gttttttgat gagaatttaa ctgttagcac gactcttaac tcaaaaatct

37861 cgatccaagc gattataact aaaatgagta atatgtaacc ataagaaaaa gaaaagttat

37921 attttacacc taatggaaat taccaaggaa atattattag atgtggagac atcagccaat

37981 gaatcaactc cattaataga aagacaagaa aaattagtct ccggtggctt aggagaattg

38041 ttgaaaaagc aaaaaaaacg aaacaaatat gacgattaat tatgaattca gtgaaaaaga

38101 aataacaaaa ttaagagaag aattgaaaaa atctagaaga agcccaggaa aaatgaatga

38161 gacggactgc agtatagtcg ttaacacttt aaaaaaaaaa aagaaaatcg aatcggaaaa

38221 aacaaccatg ttgctaatta caatgattgc tcaatcggga ggtaccaaca aatcagcagg

38281 agctaacata gaatatcgaa taggtgacga tattttgagc gcggctgaaa taaaaaccac

38341 aatcaaagag gtaaacaaca aagcaacctt cagacaattc tgtcgaagta tgcaacaaga

38401 gatagggcaa atggctacaa aactagaaat agaaggggac ctaagtctac aaatgaaatc

38461 ggctatccca gacgcaagca tggaagaaat gtgctggtgc tcaaacttcc agaccaacaa

38521 tccgaactgc cctcctaggg ttagagattg gttgaaaacc aatcaggaaa caaggttcaa

38581 taaataaaaa gactttcaca aaatctcaaa gaagacaaat aaagaaggag attgccaatc

38641 aggcaaaaaa gaaagaacac aaaaaaaaga aaatgaaaca cagaaaattt aaggcccgaa

38701 ctaaggctaa agcaatttac aaaaggaata attatattgc aagaacggct tatattaggg

38761 aaaaaatgaa aaatcaagaa gtaaagaaag agaataaaga aaaaaataga tagaaaaata

38821 ttttttatgt ttagttttat gcttacgatg gaaagcccaa tgccgggaaa actggcacgt

38881 tgggtttggg agcagattcc tgccagtaat ggtagttatc gagttcag

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

aat tcccctttca gtgaattgac taaaagtggt tttaacctcc cagatggttt

34441 tcaaactaac attattccct gtcatgatgg aattttaata ccattcacaa gagaacataa

34501 tgcaactctt ttgaatttcg gtagaatatc tgcagccatt tcagaaaggt ttagatttca

34561 agttgatgtt gtgtttttga aatttaaaat agagtaataa gataatcagt ttattgatca

34621 aaaaaatggc atttattaat cgatggttat tttctactaa tcataaagat attggggttt

34681 tatatcttgt ttttgcaatt ttttctggtg tcgttggaac agctttatct attttaataa

34741 gggctgaact ttctggtcca ggtgttcagg ttttaggtgg gaatcatcaa ttatataatg

34801 tgattgttac tggtcacgcc tttataatga ttttcttgtg cgctagttgt agttagatgt