Rhodomonas salina cox1.I2

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Information of Rhodomonas salina cox1.I2 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcggcat tttgctgcat

39481 cctttttttt tgcctttgtg gtagaaaaat tttcccgatg cattttaaga atgcatgctc

39541 agttgcttag gagcattaaa gcacgtttcc ctgattgcac ccgaaagagt gtcgttagaa

39601 gcggagacga aagtccgttg agaactcctg ggaagttcga gaaggcgtgg cgagctaagg

39661 ttactacgcg tagattaaca aagctgatac ataatggctg tattatacta ttcggtgtgc

39721 gttatcaccc aggtaaaggc acatcaacgt cgtggtctcc atttaggata tattggaggc

39781 ctatagcaac cggcgttagt cgatctaatc aagatacttt cacttcggtg gatattatgc

39841 agcgcgctaa ggtaacatat ttcgggggat gcggaaatat gcgataccct acagctcgaa

39901 agagccatgg gtacggagct tccataatag ggtttacccg aagggaggca ggtttaaggc

39961 tctataccca aaattctgcc atcagcgact cgtctatgac gtcgtgcggc attattagta

40021 agcatagaaa atttaataaa gacaaaaatt tcgttaataa gagacttatc aacattattg

40081 gcgatgtaca aactcttatt gtggcatatg agttcgtaaa aagcaaaccc ggtcaaatgg

40141 tcaagggatc tattgattca actttagacg atatagacct agcttggatt aaaagtattt

40201 ctaaggttat taaagctggt aaatttaaat ttatcccttc tagaagaatc tatgtatcaa

40261 aaaccggttg caaagaaagg cgacccataa tgacagggtt cccaagagac aaattagtcc

40321 aaaaggctat tcaattagtt cttgaaccaa tttatgaaaa tgtattcttg gagaactctc

40381 atgggtttcg ccctgcgcgt ggttgtcata cagctttaaa atcaataaaa caggggttcc

40441 atggagtcac ttgggttatt gagtcagata ttgctagttg tttctcgtcg gtgaatcatg

40501 aagttctcct tagtatcatt aaggagagga ttaaatgtgt caaaacccta gcgcttattc

40561 ggaacctact tgagtctgga tatgttgact taggggcctt ttgtaaaagc aaattaggca

40621 taccgcaagg tagcagtctt agtccccttt tatgtaatat ctatcttcat aagtttgata

40681 ctttcatgta cgaactaaaa caaaggtttg tttatacaag tagtaaagat ccgaggataa

40741 accctgcata caaacggtta caaaggcaga tccaaaatac cccaggtttg gttgaaaagt

40801 cgaaatttat tcaggaactt cgcaagactc ctagtaaaga tctttttgat cctaaatatc

40861 gacggttatt ttatattaga tatgctgatg atttttctat tggaattaca gggcaaaaaa

40921 aagacgcggt tgaaattttg gatcaagcta aaattttttt atcagaggaa ctcaaaatgg

40981 atcttaagga atctaaaata cgtgtggtcc atcttaaaaa gcaatccatt tttttccttg

41041 gtactaccat ttacggtatt agctgtgtcg agaaaccaat gagaacggtt aaacactcta

41101 attggaaaac tagcattaaa atcagggtta ctcctagggt tgggctccat gccccaatga

41161 aggttttact tgaaaaatta ttgcaaaata agtttgttaa gcgcgataag gaagggattt

41221 tcaagccgac tgcgcttggt aagcttgtta atttcgatca tgcggacatt ataggctact

41281 ataatagcgt tgctcgtggt atcatgaact attactcctt tgtggataat tatagtaggt

41341 tgggatcaat tgtaaagtat tatttattgc actcttgtgc gcttacttta gcgcttaaat

41401 acaagctccg atttaaatcc aaagcattca aacgttttgg aggaaagctt aagtgtccgg

41461 atactaaaaa ggaattcttt atacctaaga atttctttcg gactgaaaag tttagcatta

41521 atcccccaga tacagagcag gtaatatcga aacgttggaa taataaacta accaagtcta

41581 gcttatttaa agcgtgcgtt atttgcggta caacacctgc cgaaatgtac catgtatgca

41641 agaccaggga tttacgcaac aagtataaaa ccaagaaatt ggacttcttt aagttccaga

41701 tggcaagctt taaccaaaag caagttccat tatgtcagtt ccatcacaaa tcgctacacc

41761 aaggtaagct ttccgaagct gataaggttg catttagaga ggggatcaca aatttatagt

41821 ctttaacaaa tttacaccag tcttaggcgg gcgagccgta tgatgggaaa ctatcacgta

41881 cggttctgag ggcaacagtg tgggttaagt gcttcggcat atattcacta tgttgac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

aaatttttt agttcctata atgattggtg ccgttgatat

39001 ggctttccca agaatgaata atgttagttt ttggttatta cctccagcct tattattatt

39061 aattagttca acactaactg agggtggtgc tggtacaggt tggactgttt acccaccttt

39121 aagtagtgtc gaaggtcacc caagtgctgc tattgattta ggtattttta gtttacacgt

39181 tgcgggtgct tcgtctatct taggcgctat caactttatt acaacaatat tcaatatgag

39241 atgccctggt atgacgttcc atagactacc tctttttgtt tgggctgttt tgataactgc

39301 ttttttatta cttctatctt tacctgtttt cgcaggtgct attacaatgc ttcttacaga

39361 tagaaacttt aatacgacgt tttttaatcc agctggtggg ggagatcctg ttttatatca

39421 gcatcttttt tggttttttg gtcatcctga agtttatatt tgtgcggcat tttgctgcat