Saccharomyces cerevisiae cox1.I1

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Information of Saccharomyces cerevisiae cox1.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

ggtgcg

301 cctctcagtg cgtatatttc gttgatgcgt ctagcattag tattatgaat catcaataga

361 tacttaaaac atatgactaa ctcagtaggg gctaacttta cggggacaat agcatgtcat

421 aaaacaccta tgattagtgt aggtggagtt aagtgttaca tggttaggtt aacgaacaac

481 ttacaagtct ttatcaggat tacaatttcc tcttatcatt tggatatagt aaaacaagtt

541 tgattatttt acgttgaggt aatcagatta tgattcattg ttttagatag cacaggcagt

601 gtgaaaaaga tgaaggacct aaataacaca aaaggaaata cgaaaagtga gggatcaact

661 gaaagaggaa actctggagt tgacagaggt atagtagtac cgaatactca aataaaaatg

721 agatttttaa atcaagttag atactattca gtaaataata atttaaaaat agggaaggat

781 accaatattg agttatcaaa agatacaagt acttcggact tgttagaatt tgagaaatta

841 gtaatagata atataaatga ggaaaatata aataataatt tattaagtat tataaaaaac

901 gtagatatat taatattagc atataataga attaagagta aacctggtaa tataactcca

961 ggtacaacat tagaaacatt agatggtata aatataatat atttaaataa attatcaaat

1021 gaattaggaa caggtaaatt caaatttaaa cccatgagaa tagttaatat tcctaaacct

1081 aaaggtggta taagaccttt aagtgtaggt aatccaagag ataaaattgt acaagaagtt

1141 ataagaataa ttttagatac aatttttgat aaaaagatat caacacattc acatggtttt

1201 agaaagaata taagttgtca aacagcaatt tgagaagtta gaaatatatt tggtggaagt

1261 aattgattta ttgaagtaga cttaaaaaaa tgttttgata caatttctca tgatttaatt

1321 attaaagaat taaaaagata tatttcagat aaaggtttta ttgatttagt atataaatta

1381 ttaagagctg gttatattga tgagaaagga acttatcata aacctatatt aggtttacct

1441 caaggatcat taattagtcc tatcttatgt aatattgtaa taacattggt agataattga

1501 ttagaagatt atattaattt atataataaa ggtaaagtta aaaaacaaca tcctacatat

1561 aaaaaattat caagaataat tgcaaaagct aaaatatttt cgacaagatt aaaattacat

1621 aaagaaagag ctaaaggccc actatttatt tataatgatc ctaatttcaa gagaataaaa

1681 tacgttagat atgcagatga tattttaatt ggggtattag gttcaaaaaa tgattgtaaa

1741 ataatcaaaa gagatttaaa caatttttta aattcattag gtttaactat aaatgaagaa

1801 aaaactttaa ttacttgtgc aactgaacta ccagcaagat ttttaggtta taatatttca

1861 attacacctt taaaaagaat acctacagtt actaaactaa ttagaggtaa acttattaga

1921 agtagaaata caactagacc tattattaat gcaccaatta gagatattat caataaatta

1981 gctactaatg gatattgtaa gcataataaa aatggtagaa taggagtgcc tacaagagta

2041 ggtagatgac tatatgaaga acctagaaca attattaata attataaagc gttaggtaga

2101 ggtatcttaa attattataa attagctact aattataaaa gattaagaga aagaatctat

2161 tacgtattat attattcatg tgtattaact ttagctagta aatatagatt aaaaacaata

2221 agtaaaacta ttaaaaaatt tggttataat ttaaatatta ttgaaaatga taaattaatt

2281 gccaattttc caagaaatac ttttgataat atcaaaaaaa ttgaaaatca tggtatattt

2341 atatatatat cagaagctaa agtaactgat ccttttgaat atatcgattc aattaaatat

2401 atattaccta cagctaaagc taattttaat aaaccttgta gtatttgtaa ttcaactatt

2461 gatgtagaaa tacatcatgt taaacaatta catagaggta tattaaaagc acttaaagat

2521 tatattctag gtagaataat taccataaac agaaaacaaa ttccattatg taaacaatgt

2581 catattaaaa cacataaaaa taaatttaaa aatataggac ctggtatata aaatctatta

2641 ttaatgatac tcaatatgga aagccgtatg atgggaaact atcacgtacg gtttgggaaa

2701 ggctctttaa cacgtggcaa cataggttaa tttgctattt cat

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

1 ttattatcct ttaagatata acaataatta tttaaattaa attaaattaa atttaattaa

61 tttttttttt taatgaatat aataataata atattattaa aattaatata taaaaaaaaa

121 gtaaaaatgg tacaaagatg attatattca acaaatgcaa aagatattgc agtattatat

181 tttatgttag ctatttttag tggtatggca ggaacagcaa tgtctttaat cattagatta

241 gaattagctg cacctggttc acaatattta catggtaatt cacaattatt taatggtgcg