Saccharomyces cerevisiae cox1.I2

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Information of Saccharomyces cerevisiae cox1.I2 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

g tgcgccgttt cgcttaattt atcactgtat tgaagtgtta

2821 attgataaac atatctctgt ttattcaatt aatgaaaact ttaccgtatc attttggttc

2881 tgattattag tagtaacata catagtattt agatacgtaa accatatggc ttacccagtt

2941 ggggccaact caacggggac aatagcatgc cataaaagcg ctggagtaaa acagccagcg

3001 caaggtaaga actgtccgat ggctaggtta acgaattcct gtaaagaatg tttagggttc

3061 tcattaactc cttcccactt ggggattgtg attcatgctt atgtattgga agaagaggta

3121 cacgagttaa ccaaaaatga atcattagct ttaagtaaaa gttgacattt ggagggctgt

3181 acgagttcaa atggaaaatt aagaaatacg ggattgtccg aaaggggaaa ccctggggat

3241 aacggagtct tcatagtacc caaatttaat ttaaataaag cgagatactt tagtacttta

3301 tctaaattaa atgcaaggaa ggaagacagt ttagcgtatt taacaaagat taatactacg

3361 gatttttccg agttaaataa attaatagaa aataatcata ataaacttga aaccattaat

3421 actagaattt taaaattaat gtcagatatt agaatgttat taattgctta taataaaatt

3481 aaaagtaaga aaggtaatat atctaaaggt tctaataata ttaccttaga tgggattaat

3541 atttcatatt taaataaatt atctaaagat attaacacta atatgtttaa attttctccg

3601 gttagaagag ttgaaattcc taaaacatct ggaggattta gacctttaag tgttggaaat

3661 cctagagaaa aaattgtaca agaaagtatg agaataatat tagaaattat ctataataat

3721 agtttctctt attattctca tggatttaga cctaacttat cttgtttaac agctattatt

3781 caatgtaaaa attatatgca atactgtaat tgatttatta aagtagattt aaataaatgc

3841 tttgatacaa ttccacataa tatgttaatt aatgtattaa atgagagaat caaagataaa

3901 ggtttcatag acttattata taaattatta agagctggat atgttgataa aaataataat

3961 tatcataata caactttagg aattcctcaa ggtagtgttg tcagtcctat tttatgtaat

4021 atttttttag ataaattaga taaatattta gaaaataaat ttgagaatga attcaatact

4081 ggaaatatgt ctaatagagg tagaaatcca atttataata gtttatcatc taaaatttat

4141 agatgtaaat tattatctga aaaattaaaa ttgattagat taagagacca ttaccaaaga

4201 aatatgggat ccgataaaag ttttaaaaga gcttattttg ttagatatgc tgatgatatt

4261 atcattggtg taatgggttc tcataatgat tgtaaaaata ttttaaacga tattaataac

4321 ttcttaaaag aaaatttagg tatgtcaatt aatatagata aatccgttat taaacattct

4381 aaagaaggag ttagtttttt agggtatgat gtaaaagtta caccttgaga aaaaagacct

4441 tatagaatga ttaaaaaagg tgataatttt attagggtta gacatcatac tagtttagtt

4501 gttaatgccc ctattagaag tattgtaata aaattaaata aacatggcta ttgttctcat

4561 ggtattttag gaaaacccag aggggttgga agattaattc atgaagaaat gaaaaccatt

4621 ttaatgcatt acttagctgt tggtagaggt attataaact attatagatt agctaccaat

4681 tttaccacat taagaggtag aattacatac attttatttt attcatgttg tttaacatta

4741 gcaagtaaat ttaaattaaa tactgttaag aaagttattt taaaattcgg taaagtatta

4801 gttgatcctc attcaaaagt tagttttagt attgatgatt ttaaaattag acataaaata

4861 aatataactg attctaatta tacacctgat gaaattttag atagatataa atatatgtta

4921 cctagatctt tatcattatt tagtggtatt tgtcaaattt gtggttctaa acatgattta

4981 gaagtacatc acgtaagaac attaaataat gctgccaata aaattaaaga tgattattta

5041 ttaggtagaa tgattaagat aaatagaaaa caaattacta tctgtaaaac atgtcatttt

5101 aaagttcatc aaggtaaata taatggtcca ggtttataat aattattata ctccttcggg

5161 gtcgccgcgg gggcgggccg gactattaaa tatgcgttaa atggagagcc gtatgatatg

5221 aaagtatcac gtacggttcg gagagggctc ttttatatga atgttattac attcagatag

5281 gtttgctact ctac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

2281 gccaattttc caagaaatac ttttgataat atcaaaaaaa ttgaaaatca tggtatattt

2341 atatatatat cagaagctaa agtaactgat ccttttgaat atatcgattc aattaaatat

2401 atattaccta cagctaaagc taattttaat aaaccttgta gtatttgtaa ttcaactatt

2461 gatgtagaaa tacatcatgt taaacaatta catagaggta tattaaaagc acttaaagat

2521 tatattctag gtagaataat taccataaac agaaaacaaa ttccattatg taaacaatgt

2581 catattaaaa cacataaaaa taaatttaaa aatataggac ctggtatata aaatctatta

2641 ttaatgatac tcaatatgga aagccgtatg atgggaaact atcacgtacg gtttgggaaa

2701 ggctctttaa cacgtggcaa cataggttaa tttgctattt catttttagt agttggtcat

2761 gctgtattaa tgattttctg tgcgccgttt cgcttaattt atcactgtat tgaagtgtta