Schizosaccharomyces octosporus cox2.I1

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Information of Schizosaccharomyces octosporus cox2.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcg ccgtttaatt

20761 tagtattagc gatgtggtat ttaaccatca ttcctgtaac cttggaatgt aaaagaacta

20821 gcttattcga tgttgaaaaa ctagaggagt gtagcatgct agtaaaggat tgaaagtttt

20881 gtgtaattcc aaaatattat tcagttcgac ttatgtctct catggcaaat ttaattagaa

20941 attatgaagt taacactact ttagatatta agaattacaa atatatctac ttagttagta

21001 tgagaaaagt ccagattctt gtactggtta caactaagca tttactacaa catgtaggac

21061 agtttcaatt gcctaaaaga gaatctaacg ctttactaaa gaatacggga ttccctaagg

21121 aaagtaattt ctatcttgta cctgaaaggc aagagtcttt aaataaagac gggaacggag

21181 gatccgtagt agaaatgaag ttaaataaaa taaatttcaa agggatccag tcaaatctct

21241 tatcaacaac tttatccaat aaaagatttt attcgatcaa ggcttcgtta aaaaatacga

21301 aaaatgttga taaaactgag aacgatttaa ataagtttta tgaattaaat tatagacaat

21361 tatacaattt agatttaatt aaaactgcat atctagattt aaaatctaat tctgataatt

21421 ttgaaaaaaa taataataat aattctttag ataaaatttc taatgaatgg gctgaaaaga

21481 cttgtaaaag tttaaaagat agatctttca tatttaaacc ttcaagaaaa attatggtta

21541 cttgtcgtaa taatcaaaaa agagaaatta gtatcgcaaa tggaaaagat agagtaattc

21601 aacaagcatt taaaatgatt ttacaatcag cttatgaacc tatctttcta aattattctc

21661 atgggtttag accagggaga tctcctcatt cagcaatttt tgaagttaga aaatgaaccc

21721 gaattacttg gatgattaaa ggtgatatta aaggtttttt tgataatgtt gatcatcata

21781 ttttagctaa tttattaagc aaaaaaatta aggataaaaa cttaattgat ttttattgga

21841 aattagttag agctggttat gttaataatg gtaattataa agtatcaaat ttaggtattc

21901 ctcaaggagg tattttatct ccattattag ctaatattta tttacatgaa ttagatgttt

21961 atatggaaca attaattcaa aaatatacag taaataaacc agtttcaaaa aaaaataaag

22021 aacatacaag attatttagt gaaattactg ctaaatcaaa aaagaaattc ccagattttg

22081 aattaatcaa aagaatgaga aaagaactta gaagaattcc atctactatt agagactctt

22141 ctacaggtac tagaatttat tataatcgtt atggtgatga ttatgtaatt ggagtagtag

22201 gacccaaaaa tctcgcagaa acaattcaaa atttagtatc agatttttta aaaaatgagt

22261 tattgattga cttaaataaa gaaaaatccc aaattactca tttaacatca aaaagtctta

22321 aatatttagg ttacgaaatt ttcagaagaa atagaaaata ttccgaatcc caattaacat

22381 ataatagtaa aactaacaca tatagaaaag gatctaatca tagagttatt ttatatgctc

22441 ctattaatga tcttattaat aaattagttg atcataaatt tgctattcta aatggtacac

22501 aagccaaacc aaaagcgatt acaaaatgga tttatcttga acctcgagaa attattagtc

22561 gatataatgg aattttaaat ggaatttatt attattataa aggagttgat aatttaaatc

22621 aattaagtta tactaattgg attttaagat tttcagcagt atttacatta tcaagaaaat

22681 ggaatattag tcctaaaaaa gttttcaaaa aattaggtaa aaatttaaca gtaaaaactg

22741 taaatagtaa aggaaaagaa acatcaattt cattagcatt acctaaaaca ttatcaagaa

22801 atagattatt taaattagat aactacttaa attttgaccc atttaaaatc aaatattata

22861 gtgtaagatc tcatcatgta tgggatgaac cttgtataat ttgtggaaca aatgaaaaag

22921 tcgaaatgca tcatgtaaat catattagac gaggtaaaaa agtaggattt acaggacttc

22981 aaagtcaatt aaatcgaaaa caaattccag tttgtgtaaa ttgtcatgat aaaattcata

23041 gtggaaaata tgatggatta tcattaaaaa atctaaaata accacgcagt atagatttga

23101 tggaaagccg tatgcaggga aacttgcacg tacggtttgg tggaaggttt ctcataaccc

23161 aagaggtgtg gaaaatcgat ccaac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

tattt ggttcaattc caaatagaac tagttaaata

20281 tcagcttatt tttgagtcct acgaaagtag gagttacgtt gcagaataac gtgattttct

20341 taaataggtc gatatattat attcttaatt tattcacaat gttattttta aatcaaatta

20401 tgaatgatgc tccttcaagc tggggactat atttccaaga tggtgcttct cctagctatg

20461 ttggtatcac tcatttaaat gattatctaa tgttttatct tactttcgtc ttcattggtg

20521 ttatttatgg tattattaaa acagcttacc aatataactc atcaacttat ccaatttcaa

20581 acaaatatgc aacacatggt tcaattgttg aatttgtatg gacattaatt cctgcattag

20641 ttttaatctt ggttgctctt ccttcattta aattattata tttattggac gaagttcaaa

20701 aaccaagtat gactgttaaa tgtttaggca gacaatggta ctggagtgcg ccgtttaatt