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Information of Schizosaccharomyces pombe cox1.I1 intron (Format of information for each intron)
[intron with flanking sequence]
The boundaries of the intron are marked as red and the ORF is marked as blue.
For many organellar introns, the ORF is translated in frame with the upstream
exon ORF. The precursor protein is then processed to a mature form that cuts
off all of the exon-encoded and some of the intron-encoded polypeptide. This
situation is indicated here by blue-coded ORF that extends to the start of
the intron rather than by a translation start approximately 500 bp after the
start of the intron.
3' end
1 gtgcgattct gtgtcacttg tatacctgct ctctaaccgg gagtttgagt tagtactaca
61 ctcaatacaa agaatagcta accttaattc gaaagatgag ggggacaata gcatgctatt
121 aaactactat gagcctaaac tgcgaaaatt ggcaagaagt agtagctctt taaaattcct
181 atggtcaaac ctaaactggt ttaaatccaa atcatgtatg tcctgcatag acagtagact
241 ttgcagttat cggtcttcaa tacgtgcatt ttctctccga agaacagata aaatgagtac
301 ttgcgtattt gcaacaacat ctataaggtg ttggaatatg attgagtgga aacctaaggg
361 aatcaggtgg tatacttgtg gaactggatg attgcctaag ggaagtaatt cctatggtaa
421 cggaagaccc attgtagtcg ttcaatcaca aattgaatat agctctttaa tacagagaaa
481 agacgaaggg gtacgactat attcttctga tcaaactaat agcctagaat actctgggct
541 aaaagtgctt tcagatattc aaaaagaaag tagaaataat ttagtttcta atatttataa
601 acgatgtttg ttaaacgaag atttatttat tgcagcatat caaaaaattt cttctaataa
661 aggttctgta acagctggaa ttgataaaat cactttagat ggttattcta ttaatgaaat
721 taagaaaact attgaacaat taaaagatca ttctttccaa tttaaaccag ctagaaggga
781 atatattcct aaagctaatg gtaaattgag acccttagga atcccaagtc ctagagataa
841 aattgtacaa caagttatgg tttttgttct tgaatctatc tttgaacaaa aatttcttga
901 ttgttctaat ggtttcagac ctaataaagg aactcatact gctttaaaat ctattgctgg
961 ttgaaaagct ttagattgag taattgaagg tgatattaaa agctattttg atttaattga
1021 tcaccaaact cttatttcat tactctctaa tgtaattaac gataaagaat ttattgatct
1081 ttgttgaaaa gctattagag ctggttatgt tgaggttaaa atgaataaaa agatagatac
1141 tataattgga acaccacaag gtagtgtatt atctccaata cttgctaata tttatttaca
1201 tgaatttgat aaatttatga tggaaaaagt taatttaagt ttagattctg gttctacttc
1261 aaaaagattc aaaccatata gattgttaga agcaaaaata aactatattt accaattaga
1321 aagaaaaaat ggttctctaa caaatgaaca agttaaatct cttaaaaaac taacaattga
1381 gagaaataaa ttacctagta caattggagg acctggttat cgtatttatt atgttagata
1441 tgctgatgat ttcttaattg gtattaatgg taaaagaact ttagctctac aactaaaatc
1501 tgaaataaat gaatttttaa ctaatactct taaattaacg atgagtgttg aaaaaacaaa
1561 agtaactaat ataaaagatg attatgcttt attcttaggt gctgaaattc atcgattaac
1621 ttctagaaat aataatagta aagttataag taaacaatac agttctggta attttaattc
1681 tagagttgca aatagtagaa ctagtcttct tatacctgta aaatatgtaa taaaaaaatt
1741 agccaatcag aacttctgtg aaataaaaga ttataatcaa ggtaaaataa ttcctaaagg
1801 taaaacagcc tggattaatc taagtttaaa agatattgta ttaagataca atgctgttct
1861 aagaggtatt gttaattatt actcatttgc agctaataga gctagattac aatttgttca
1921 atttattctt caacatagtt gtgctaaatt aatagctaga aaactcaaat tacacagtag
1981 agctcaagtt tttaaaaagt ttggatctaa tctacaaatt gtggaaggaa caggtaaaag
2041 tagaaaatca gtttctctta aacttgcaaa ttcctataaa caaatagtta aatttaatat
2101 aaaccctagt gttccattag aagaagttta ttggtcactt agaaccaaat caaaattaaa
2161 tgaatgttgt gtaatttgta aatctactga aaatgttcaa atgcatcata tcaaagctct
2221 aaaatcagaa tacaataaaa aagtatctgg atttacaaaa gttatgatag ctatgaacag
2281 aaaacaaatt cctgtttgtc aaaattgtca tattaagatt cataaaggct tatatgatgg
2341 tttaaattta aaatctatta aataatttat actattctct tgaattaata atatagttag
2401 gagccgtatg cattgaaaga tgcacgtacg gttctagggg agagggcttg atcttccatt
2461 attttaatat tggactcggg ttcttatcct ac
Genbank entry, intron is marked as red
No flanking
sequence information is available for this intron
787 a.a.
CDSVSLVYLLSNREFELVLHSIQRIANLNSKDEGDNSMLLNYYEPKLRKLARSSSSLK
FLWSNLNWFKSKSCMSCIDSRLCSYRSSIRAFSLRRTDKMSTCVFATTSIRCWNMIEW
KPKGIRWYTCGTGWLPKGSNSYGNGRPIVVVQSQIEYSSLIQRKDEGVRLYSSDQTNS
LEYSGLKVLSDIQKESRNNLVSNIYKRCLLNEDLFIAAYQKISSNKGSVTAGIDKITL
DGYSINEIKKTIEQLKDHSFQFKPARREYIPKANGKLRPLGIPSPRDKIVQQVMVFVL
ESIFEQKFLDCSNGFRPNKGTHTALKSIAGWKALDWVIEGDIKSYFDLIDHQTLISLL
SNVINDKEFIDLCWKAIRAGYVEVKMNKKIDTIIGTPQGSVLSPILANIYLHEFDKFM
MEKVNLSLDSGSTSKRFKPYRLLEAKINYIYQLERKNGSLTNEQVKSLKKLTIERNKL
PSTIGGPGYRIYYVRYADDFLIGINGKRTLALQLKSEINEFLTNTLKLTMSVEKTKVT
NIKDDYALFLGAEIHRLTSRNNNSKVISKQYSSGNFNSRVANSRTSLLIPVKYVIKKL
ANQNFCEIKDYNQGKIIPKGKTAWINLSLKDIVLRYNAVLRGIVNYYSFAANRARLQF
VQFILQHSCAKLIARKLKLHSRAQVFKKFGSNLQIVEGTGKSRKSVSLKLANSYKQIV
KFNINPSVPLEEVYWSLRTKSKLNECCVICKSTENVQMHHIKALKSEYNKKVSGFTKV
MIAMNRKQIPVCQNCHIKIHKGLYDGLNLKSIK
