Thalassiosira pseudooana cox1.I2

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Information of Thalassiosira pseudooana cox1.I2 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

Note: This intron sequence occurs on the reverse complement of the original

GenBank sequence. Therefore, all sequences below are reverse complements of

the GenBank sequence.

3' end

gtgcgg cgtctaacgt cgttttcgcc tgtcttgact ttgatcaaga

41041 ctcacattac ttgcttattc gttaattaat gaatatattg attaaacgat ttgtgataaa

41101 gcatgatgct tacctgagag ggctaacctc gcaagggacc atagcatgca tcagaaggcg

41161 ctctgaaaga gtgagtgcca agctattaac taatatgggt aggtttacga atcccagtta

41221 caactttctg gcagggtctg aagtccctat taaacgattg agtgttagaa attacgtagt

41281 ctttctttca tcaagcaagt tcaacaagcc ggctgcaagt agcagtttta gaaaggggag

41341 ccctaagtta gttttgcgac gaaaacgaac ggaattcgcg atgacccgaa attcgaaaga

41401 atgggggtta cggagggtcc atagtactgc gcaatcttgc aggaaggaac ctagttatgt

41461 taggtttgac aaagatacgc tttcgggtgt atacgaatca aatcagttgg acttattgag

41521 atcttatatt atcagtaaca aaaaatgtgt caatttgagt agtatcatgt ctgatccaaa

41581 ttttctaatt gccgcttggg ctagaatccg ctctaatagt ggaagtttaa cttttgcttt

41641 gagtaaagaa accttagatg gaatcgctct atcttggtta gaggaaactg caaataccat

41701 gcggaacgga atattccaat tttctccttc tagaagaact tacatttcta agtctgatgg

41761 ggggaagaga cctttaacta ttccttctcc gagagataag attgtccaag aagccatgcg

41821 ttttttatta atgctggttt tcgaaggtga ttttagcaaa aactctcatg gttgggtatc

41881 cggtagaggc tgtcatactg ctttaaacca aattaaaatg gaatttgccc acgataattg

41941 gcttattgaa ggggatattg atcaacaatt cccaagcttg aatcatcagg tattggtcaa

42001 tttactgaaa accaagatag atgaccaagc ttttatagac ttaatctaca aataccttag

42061 agtgggttat ggtgagtccc cagataaaat agttaaaatg cgcattggga caagccaagg

42121 aggagtttta tctcctgttc tagcgaacat ttatatgact ccttttgaca aatgggttga

42181 aagagatctt atacctaaat atactaaagg taaaagaagg aaagccaacc ctgtttatac

42241 aaaaatgata cgttccggaa aagttactga tcactctatc cctagtttgt atgcacatga

42301 tcgaaatttt attagacttc actatgttcg ttatgcggac gatttcatca tgggtttaaa

42361 tggtccaaaa gtttattgta agcaaatagt tgatgagtgc aaaacgtttt tgttcgaaca

42421 actaaaactt accttaaaca tcgaaaagac caagataact catagtcagt tagattccgc

42481 aacattttta ggttatcgtg tatacaaaac taagctttct aaaatgaaaa tagctcataa

42541 tctcaaaggt caactttctc gtagaaccac taatactgtt ttagacggtc ctaccgatca

42601 aattgtaaaa aagttgaatg aacgaggtta caccaagaaa gacggttcac ctaccagaaa

42661 tggaagattt ataaatcata cgttgtatga tatgatagaa cattataaaa cggtggaaag

42721 aggtattctt caatactaca agttagctaa taattacggt agagtcgctg ctagagtaca

42781 ttatatctta aaatactctt gtgcccttac cattgcctct aagatgaaac ttactactct

42841 acggagggta tttaacaaat acggcaagaa tcttaatatt aaagatgaat cgggtaaaat

42901 tattattagt taccctacgg tcgattatcg tcgtccgaaa aagtttacta tagctcctat

42961 attagactat tcttcattag aagcatatat tgaccagtat gatcgtcgag tacaaagagg

43021 tcgtaaagat cttaaaggcc cttgtgtatt atgtggcagt aatcaggata ttgaaattca

43081 tcacgttcga aaatttagta aaactaagcg taaagactac ttatccagta tgatgtctag

43141 aatgaatcga aaacaagttc ctgtttgcaa aaaatgtcat ataaaaatac atcagggcgt

43201 atacgatggc aaacgagtca aataaaactt ctgtccaatt ttaacatgag tgagagccgt

43261 atgcagggaa acttgcacgt acggttcggg gtcgatttat tgataagcaa cgagattggt

43321 aaattaggcc ac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

tagaaa

40501 tttcaatacc acattttttg atcctgcagg aggaggtgat cctgtgttat ttcaacatct

40561 tttttgattt tttggtcacc ctgaagttta tatacttatt ttacctggat ttggtattat

40621 aagccacatt gtagttagta ccgcaaaaaa acctattttt ggttaccttg gtatggttta

40681 cgctatgttt tctatcggtg ttttaggttt tatcgtatgg gctcaccata tgtttactgt

40741 aggtttggat atagatacca gagcttactt tacagcagca actatgatta ttgctattcc

40801 aacaggaatt aaaatattta gttgacttgc tacattatga ggtggttcta ttgatctacg

40861 gaccccaggt ctttttgcaa ttggtttcat atttttattc accgtaggtg gcgttacagg

40921 agttgttctt gctaattctg gtattgatat agctttacat gatacctatt atgtggtagc

40981 acattttcat tacggtgcgg cgtctaacgt cgttttcgcc tgtcttgact ttgatcaaga