Vicia faba nad1.I4

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcggg

781 gctttgcatc tgacattcgt tgggcttccc tcttcgggag cctgcgtccc ggcgtttttg

841 tgcaataaac ccctccggcc gaagactagt ggtaggtggt cccgcggagc tttcggagaa

901 gggtagccta gtgtgtaagc acagcaatga accgcggcga accctcagac gacctatcta

961 agattagggg ggagatcctc agtagtggtg accctttaac tcttccacgg actgatacat

1021 gtaccgaatg ctcatacggg aaagtcgact cccgggtctg gaacgaagtc tccgataaat

1081 cctttctttc tcgtccactc aggggggtgc ggacacacct gcgcggatta caggtgacgg

1141 ttacaagaat ggcggggaag ttaacagtac ccgacgacat ttagggatgg atgtagaccc

1201 atcgggcggg gataatcatt ccggtcctgg gagaggtggc gaccattctc aagaactgag

1261 ctgagggaag ccttatgagt cactgaaacg acggcagggg ggccttgatc tatcaataga

1321 gggagcaaaa aacgggcttt gctccccttt acaatatgaa gaaataaata agggtcgaag

1381 tttagaccgc ttacagtagt tctacctata gaaaagatca ttaaagaggc gatcagaatg

1441 gtactcgaat ccatttatga tcccgagttt ccagacacat cgcacttccg ctcgggtcga

1501 ggccgctact cggccctaag acggatcaaa gaagagtggg gaacctctcg ctggtttttt

1561 gaattcgaca tcaggaagtg ttttcacacc atcgaccgac atcgactcat cccaatcttt

1621 aaggaagaga tcgacgatcc caagttcttt tactccattc ataaagtctt ttccgccgga

1681 cgactcgtag gaggtgagaa gggcccttac tccgtcccac acagtgtact actatcggcc

1741 ctaccaggca acatctacct acacaagctc gatcaggaga taggaaggat ccgacaaaag

1801 tacgaaattc cgagaataag atcggttcta ttaaggacag gtcgtattga tgaccaagaa

1861 aactctggag aagaagcaag cttaaatgct ccccaagaca acagagccat cattgtgggc

1921 agggtcaaga gcattcaacg caaagcggcc tttcattccc ttgtttcgtc gtggcacacc

1981 ccccccacaa gcaccccccg gcgaaggggg gaccagaaaa cgcctttcgt tttcccccct

2041 tcgtcggccc tagccgcctt ccttaacaag ccctcgagcc tcctttgcgc cgccttcttc

2101 atagaagccg ccggggccgg gttgaccccg aagaccgaat tctatggtag agaatgctgc

2161 tttaataata atttggccat gagagacctt attaagtatt gcaaaagaaa gggcctgctg

2221 atagagctgg gcggggaggc gagactagtt atcaggtcag agagaggcct ggcccgtaaa

2281 ctggccccct tcaaaataaa aacccattat ttcataagga tttgttacgt gcgatatgcc

2341 gacgacttac tactgggaat cgtgggtgcc gtagagcttc tcatagaaat acaaaaacgt

2401 atcgcccact tcctacaatc cggcctgaac ctttgggtag gctctgcagg atcaacaaca

2461 atagctgcac ggagtacggt tgaattcccc ggtatggtca ttcgggaagt ccctccgagg

2521 acgactccca tacaattatt gcgagagctg gagaagcgtc tacgggtaaa gcaccgtatc

2581 catataactg tttgccacct acgctccgcc atccattcca agtttaggaa cctagggaat

2641 agtatcccga tcaaacagct gacgaagggg atgagcgaaa gagggagtct actggacggg

2701 gttccactag cggagactct tggaacagct ggagtcagaa gtccccaagt aagcgtatta

2761 tgggggaccg tccagcacat ctggcaagga tcgaggggga tctcgttgtt gcatagctca

2821 ggtcggagca acgcgccatc ggacgttcaa gaggcagtcg cacgatcggg catgagtgtc

2881 cggaagttgt cattgtatac tcccgcgggt cggaaggcgg cgggggaagg aggaggacac

2941 agggcgggat ctatcagcag cgaattcccc atacagatag aggcgcctat aaaaaagata

3001 ctccgaaggc ttcgggatcg aggtatcatt agccgaagaa gaccttggcc aatccacgtg

3061 gcctgcttga cgaacgtcag cgacggagac atcgtaaatt ggtctgcggg catcgcgata

3121 agtcctctgt cctactacag gtgctgcgac aacctttacc aagtccgaac gattgtcgac

3181 caccagatcc gctggtctgc aatattcacc ctagcccaca agcacaaatc ctcggcgcgg

3241 aatataatcc ccaagtactc caaagactca aagatagtaa atcaagaagg tggtaagacc

3301 cttgcagagt tccccaacag catagagctt gggaagctcg gacccggtaa agatccgaac

3361 aacaaggagc actccactac tagtctagtc gttttttttc tattagttgc gatgcgaaca

3421 ggcgtttact tatgagattc attgagtagg cttgcatgag ttgtctgcta taagatagct

3481 agttttgggg ctttcaacat aaataaaaaa gcctatccgg cttcgctatc gctcatgact

3541 tgtattgtag tcggcccgga atgcctttgt agtcttttta atgctaatgc cttcttcctt

3601 cattcctttt ttttagttgc ggcagcttcc gcgccagcaa gatacggacg gcgaagccaa

3661 agcaatacta aacaagcgag aaaagcccta tatattctat tagtcaagcc taaacttatt

3721 gaaaactaaa gcgctaacga gcaagaaaac gggaaggttg gttcgaggac ccgttggtca

3781 aaggaaaggg ggggtccttc ttccgggacg gagccgtatg acgcgagagt ctcacgtacg

3841 gttcctttga gaagggtgtg agaccaccac ctatcaggcc cgacgagcgg tccacggagc

3901 tgcatcccta ctcac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

gatctgg cctcacgcaa ccaaggcttt

301 ccaagtagta agttgaatga agtgaggata tctatgacat ggaaggtgga ccaaaaggtt

361 tggcgttttt caggcctatt tggacatcgg caatcagcct gcctcttgct ggccttatcg

421 aattctcata agcggttatg tacacgggag aaggagccag tgagtcctca taaatgtcaa

481 gggcgcgcag cgtggatagg gggggggacc cttatgtttt tgtgaaaaaa gctcggctcc

541 tgttattgct taaaaaaaaa cctaatacct ctatttgatg tcgattcatc catacttcca

601 tttttgaggg aggctgactg cttgccggct ggtagctgta tgagcggtaa cgtccacgta

661 cggctccgtg agaagggcgg tgggcagaaa tggccttgtt gtacctcact ctcgtcttca

721 atggggtctg ctcttttttt tttgggagag tatgccaata tgatcttaat gaggtgcggg