Venturia inaequalis cob1.I1

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Information of Venturia inaequalis cob1.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgc tgtgataaca gcccaatgtc gagtgactcg

241 gtcacaatcg ttcctttaac tgcgattata ccatcagggt taggttgagg ggaaagccct

301 ttgctgaact tagcatccct gctagaagcg acaatcaata gtaaatcgat atctataaga

361 acagtcgcaa ggtatttctt ctatgatgag gctcttacta gccaaacaat aataaccatt

421 tacctcaagc taagggtagc actcgtcgat tacaggtgtc ttattctctt agtaagtatt

481 agtgcgtgac ttactttaga aggagagaat aaaaattgtt caaaaagaac aagtaaggtt

541 atgggtgttg catctaagga agactcacga acattgacgc tgagcacagg attgcctaag

601 ggaagtaatt cctatcggca acggagcaac tatagtacct gagctgtccc taggaggaca

661 gtatacgact tgggtaatgc caagtgaaag ggaagagttg cagcctctat attattcaat

721 aggacatacg tctccggagg agatacggaa gaaaaatcca acgtaggttt aaaattgaat

781 aaactctcca taagatccaa atcaaatccc aattctatca tagacaggga actatataca

841 ctagccacaa gtgtggacac gcttatttat gcctatgaaa atattaagag taaaccaggt

901 aacatgactc agggtgtatt gcccgaaacc ctggatggga tctctaggga aaaactaact

961 aaactatctg atagtttgag aagtgagaaa ttttcgttct cgcccagccg tagaattcag

1021 ataccgaaag catctggtgg cagtcgtcct ttatctatcg catcgccaat ggacaaaatt

1081 gtccaggaag ctatgaggtt agtactagaa gcgatatatg acccggtttt cttggattgt

1141 tcccacgggt tcagacctaa taaaagctgt cataccgcct taaaaagcgt aagccaagag

1201 ttccaaccag tacaatgggt aatagagggc gatctggcca aatttttcga ttcgatatct

1261 cactcgaaac tgatgaaatt agtggaaagt aagataaccg acaggagatt caccaattta

1321 atctgaaaag ccctaaccgc cggttacttt gaatttaaaa tctataagtc caatatagtt

1381 ggaacacctc aaggttctat agttagtcct atcctagcca atatcttctt gcaccaacta

1441 gacctatttg tcaattgcct taaaagggac ttcgataaag gtactagagc gcctagatcc

1501 aagtcaagta gatattatga ataccatacc ctaaaagcca gaaaagcagg cgataccttg

1561 caactacaaa aacttatcgc agaaaggtcc caaaatcctt ccatagattt cggatcggaa

1621 tccttcaaaa gattagttta cgtaaggtat gccgacgact gaattatagg tataagaggt

1681 actagggaac aagccaaata tattctaacc aaagttagag aattctgcac ctctattgat

1741 ctggagctga gcgaacataa aacgaaactg acctcactac attcccaacc aattctattc

1801 ctaggtacta gtatctctag atctagccac gttagataca gtagaatagg atccgtgaga

1861 agaattagac gtaataagtt aggtctcaga ttagaggccc cattagatag aattaagaaa

1921 aaactggaaa actctaactt tatgtcaaaa ggaaaatctt cccctaaatt tctttgactt

1981 cataatgagc atgaccagat aatccttctt tacaatgcga ctctaagagg tttcctgaac

2041 tactacaact ttgcccacaa ttatggtaga ctggccagtt acctggagta catcctaaaa

2101 caatcatgtg caaaattact cgcaactaag ttcaaactag gaactatggc taaaacttac

2161 aagaaatatg gaggtagact taccgggaac aaaggcaaat catttctaaa gccaagctat

2221 agaattaccc taaaattctt gataaaccca tctccaatag taggctcttt atttcaagag

2281 aaaaccactg cgaccctaga taaccttaaa tgtagtctat gcgaataaac ttatagagtg

2341 gaaatgcatc acgtgcgggc tatgaaagac cttaacccta aggtatctta tttagacagg

2401 caaatgatca gaataaaccg taagaggatc ccgctatgca gaaggtgcca catcattaaa

2461 cacagtaaaa acagtgaccc tatgggttag aaaagaaaag atttgatata aataatatag

2521 agagcattat agaggtggag agccgtatga ggggaaactt tcacgtacgg ttcgggaaag

2581 gggtaaagat aatccagaag ttgcgaggct tatctggaac ctttactcta gttcac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

1 aagcttgtta gcttatataa aaaaatctca ctttttcaat ttgatatgcg aattttaaaa

61 agtcatccac tattgagatt agccaattct tatataattg attccccaca accctctaac

121 ataagttacc tgtgaaattt cggttcttta ttagcattct gtttagttat acaaattata

181 actggtgtta ctttagcaat gcacgtgcgc tgtgataaca gcccaatgtc gagtgactcg