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Information of Venturia inaequalis cob1.I1 intron   (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

 

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts 

off all of the exon-encoded and some of the intron-encoded polypeptide. This 

situation is indicated here by blue-coded ORF that extends to the start of 

the intron rather than by a translation start approximately 500 bp after the 

start of the intron.

3' end

                               gtgcgc tgtgataaca gcccaatgtc gagtgactcg 

 241 gtcacaatcg ttcctttaac tgcgattata ccatcagggt taggttgagg ggaaagccct 

 301 ttgctgaact tagcatccct gctagaagcg acaatcaata gtaaatcgat atctataaga 

 361 acagtcgcaa ggtatttctt ctatgatgag gctcttacta gccaaacaat aataaccatt 

 421 tacctcaagc taagggtagc actcgtcgat tacaggtgtc ttattctctt agtaagtatt 

 481 agtgcgtgac ttactttaga aggagagaat aaaaattgtt caaaaagaac aagtaaggtt 

 541 atgggtgttg catctaagga agactcacga acattgacgc tgagcacagg attgcctaag 

 601 ggaagtaatt cctatcggca acggagcaac tatagtacct gagctgtccc taggaggaca 

 661 gtatacgact tgggtaatgc caagtgaaag ggaagagttg cagcctctat attattcaat 

 721 aggacatacg tctccggagg agatacggaa gaaaaatcca acgtaggttt aaaattgaat 

 781 aaactctcca taagatccaa atcaaatccc aattctatca tagacaggga actatataca 

 841 ctagccacaa gtgtggacac gcttatttat gcctatgaaa atattaagag taaaccaggt 

 901 aacatgactc agggtgtatt gcccgaaacc ctggatggga tctctaggga aaaactaact 

 961 aaactatctg atagtttgag aagtgagaaa ttttcgttct cgcccagccg tagaattcag 

1021 ataccgaaag catctggtgg cagtcgtcct ttatctatcg catcgccaat ggacaaaatt 

1081 gtccaggaag ctatgaggtt agtactagaa gcgatatatg acccggtttt cttggattgt 

1141 tcccacgggt tcagacctaa taaaagctgt cataccgcct taaaaagcgt aagccaagag 

1201 ttccaaccag tacaatgggt aatagagggc gatctggcca aatttttcga ttcgatatct 

1261 cactcgaaac tgatgaaatt agtggaaagt aagataaccg acaggagatt caccaattta 

1321 atctgaaaag ccctaaccgc cggttacttt gaatttaaaa tctataagtc caatatagtt 

1381 ggaacacctc aaggttctat agttagtcct atcctagcca atatcttctt gcaccaacta 

1441 gacctatttg tcaattgcct taaaagggac ttcgataaag gtactagagc gcctagatcc 

1501 aagtcaagta gatattatga ataccatacc ctaaaagcca gaaaagcagg cgataccttg 

1561 caactacaaa aacttatcgc agaaaggtcc caaaatcctt ccatagattt cggatcggaa 

1621 tccttcaaaa gattagttta cgtaaggtat gccgacgact gaattatagg tataagaggt 

1681 actagggaac aagccaaata tattctaacc aaagttagag aattctgcac ctctattgat 

1741 ctggagctga gcgaacataa aacgaaactg acctcactac attcccaacc aattctattc 

1801 ctaggtacta gtatctctag atctagccac gttagataca gtagaatagg atccgtgaga 

1861 agaattagac gtaataagtt aggtctcaga ttagaggccc cattagatag aattaagaaa 

1921 aaactggaaa actctaactt tatgtcaaaa ggaaaatctt cccctaaatt tctttgactt 

1981 cataatgagc atgaccagat aatccttctt tacaatgcga ctctaagagg tttcctgaac 

2041 tactacaact ttgcccacaa ttatggtaga ctggccagtt acctggagta catcctaaaa 

2101 caatcatgtg caaaattact cgcaactaag ttcaaactag gaactatggc taaaacttac 

2161 aagaaatatg gaggtagact taccgggaac aaaggcaaat catttctaaa gccaagctat 

2221 agaattaccc taaaattctt gataaaccca tctccaatag taggctcttt atttcaagag 

2281 aaaaccactg cgaccctaga taaccttaaa tgtagtctat gcgaataaac ttatagagtg 

2341 gaaatgcatc acgtgcgggc tatgaaagac cttaacccta aggtatctta tttagacagg 

2401 caaatgatca gaataaaccg taagaggatc ccgctatgca gaaggtgcca catcattaaa 

2461 cacagtaaaa acagtgaccc tatgggttag aaaagaaaag atttgatata aataatatag 

2521 agagcattat agaggtggag agccgtatga ggggaaactt tcacgtacgg ttcgggaaag 

2581 gggtaaagat aatccagaag ttgcgaggct tatctggaac ctttactcta gttcac

 

                                                                   

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[intron& flanking sequence]

 

Genbank entry, intron is marked as red

 

   1 aagcttgtta gcttatataa aaaaatctca ctttttcaat ttgatatgcg aattttaaaa 

  61 agtcatccac tattgagatt agccaattct tatataattg attccccaca accctctaac 

 121 ataagttacc tgtgaaattt cggttcttta ttagcattct gtttagttat acaaattata 

 181 actggtgtta ctttagcaat gcacgtgcgc tgtgataaca gcccaatgtc gagtgactcg 

 241 gtcacaatcg ttcctttaac tgcgattata ccatcagggt taggttgagg ggaaagccct 

 301 ttgctgaact tagcatccct gctagaagcg acaatcaata gtaaatcgat atctataaga 

 361 acagtcgcaa ggtatttctt ctatgatgag gctcttacta gccaaacaat aataaccatt 

 421 tacctcaagc taagggtagc actcgtcgat tacaggtgtc ttattctctt agtaagtatt 

 481 agtgcgtgac ttactttaga aggagagaat aaaaattgtt caaaaagaac aagtaaggtt 

 541 atgggtgttg catctaagga agactcacga acattgacgc tgagcacagg attgcctaag 

 601 ggaagtaatt cctatcggca acggagcaac tatagtacct gagctgtccc taggaggaca 

 661 gtatacgact tgggtaatgc caagtgaaag ggaagagttg cagcctctat attattcaat 

 721 aggacatacg tctccggagg agatacggaa gaaaaatcca acgtaggttt aaaattgaat 

 781 aaactctcca taagatccaa atcaaatccc aattctatca tagacaggga actatataca 

 841 ctagccacaa gtgtggacac gcttatttat gcctatgaaa atattaagag taaaccaggt 

 901 aacatgactc agggtgtatt gcccgaaacc ctggatggga tctctaggga aaaactaact 

 961 aaactatctg atagtttgag aagtgagaaa ttttcgttct cgcccagccg tagaattcag 

1021 ataccgaaag catctggtgg cagtcgtcct ttatctatcg catcgccaat ggacaaaatt 

1081 gtccaggaag ctatgaggtt agtactagaa gcgatatatg acccggtttt cttggattgt 

1141 tcccacgggt tcagacctaa taaaagctgt cataccgcct taaaaagcgt aagccaagag 

1201 ttccaaccag tacaatgggt aatagagggc gatctggcca aatttttcga ttcgatatct 

1261 cactcgaaac tgatgaaatt agtggaaagt aagataaccg acaggagatt caccaattta 

1321 atctgaaaag ccctaaccgc cggttacttt gaatttaaaa tctataagtc caatatagtt 

1381 ggaacacctc aaggttctat agttagtcct atcctagcca atatcttctt gcaccaacta 

1441 gacctatttg tcaattgcct taaaagggac ttcgataaag gtactagagc gcctagatcc 

1501 aagtcaagta gatattatga ataccatacc ctaaaagcca gaaaagcagg cgataccttg 

1561 caactacaaa aacttatcgc agaaaggtcc caaaatcctt ccatagattt cggatcggaa 

1621 tccttcaaaa gattagttta cgtaaggtat gccgacgact gaattatagg tataagaggt 

1681 actagggaac aagccaaata tattctaacc aaagttagag aattctgcac ctctattgat 

1741 ctggagctga gcgaacataa aacgaaactg acctcactac attcccaacc aattctattc 

1801 ctaggtacta gtatctctag atctagccac gttagataca gtagaatagg atccgtgaga 

1861 agaattagac gtaataagtt aggtctcaga ttagaggccc cattagatag aattaagaaa 

1921 aaactggaaa actctaactt tatgtcaaaa ggaaaatctt cccctaaatt tctttgactt 

1981 cataatgagc atgaccagat aatccttctt tacaatgcga ctctaagagg tttcctgaac 

2041 tactacaact ttgcccacaa ttatggtaga ctggccagtt acctggagta catcctaaaa 

2101 caatcatgtg caaaattact cgcaactaag ttcaaactag gaactatggc taaaacttac 

2161 aagaaatatg gaggtagact taccgggaac aaaggcaaat catttctaaa gccaagctat 

2221 agaattaccc taaaattctt gataaaccca tctccaatag taggctcttt atttcaagag 

2281 aaaaccactg cgaccctaga taaccttaaa tgtagtctat gcgaataaac ttatagagtg 

2341 gaaatgcatc acgtgcgggc tatgaaagac cttaacccta aggtatctta tttagacagg 

2401 caaatgatca gaataaaccg taagaggatc ccgctatgca gaaggtgcca catcattaaa 

2461 cacagtaaaa acagtgaccc tatgggttag aaaagaaaag atttgatata aataatatag 

2521 agagcattat agaggtggag agccgtatga ggggaaactt tcacgtacgg ttcgggaaag 

2581 gggtaaagat aatccagaag ttgcgaggct tatctggaac ctttactcta gttcactaca 

2641 atcctagtgt gctagaagca tttaattccg ttgagcatat tatgcgagac gttaacaatg 

2701 gatgattaat acgatattta cacgctaata ctgcttcagc tttcttcttc atagtcgttt 

2761 tatagcatat ttcgtatact tttatttgtg taattccttt tttactttca aaaaagcttg 

2821 taataagaaa cccgtagcat tatatagtga tagagttcgg gtgccactat acctaactcg 

2881 taaacatagc acagcactgc catctcgatt caaaacacac catggaaaga ataaatttag 

2941 tggtaaaaga ctactaagta ccgcaagtga taaaggccag agttctggtc gtaaaaggtt 

3001 agactccctt tctaataaag actttgccga gtgatt

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[ORF sequence]

 

707 a.a.

 

VRCDNSPMSSDSVTIVPLTAIIPSGLGWGESPLLNLASLLEATINSKSISIRTVARYF

FYDEALTSQTIITIYLKLRVALVDYRCLILLVSISAWLTLEGENKNCSKRTSKVMGVA

SKEDSRTLTLSTGLPKGSNSYRQRSNYSTWAVPRRTVYDLGNAKWKGRVAASILFNRT

YVSGGDTEEKSNVGLKLNKLSIRSKSNPNSIIDRELYTLATSVDTLIYAYENIKSKPG

NMTQGVLPETLDGISREKLTKLSDSLRSEKFSFSPSRRIQIPKASGGSRPLSIASPMD

KIVQEAMRLVLEAIYDPVFLDCSHGFRPNKSCHTALKSVSQEFQPVQWVIEGDLAKFF

DSISHSKLMKLVESKITDRRFTNLIWKALTAGYFEFKIYKSNIVGTPQGSIVSPILAN

IFLHQLDLFVNCLKRDFDKGTRAPRSKSSRYYEYHTLKARKAGDTLQLQKLIAERSQN

PSIDFGSESFKRLVYVRYADDWIIGIRGTREQAKYILTKVREFCTSIDLELSEHKTKL

TSLHSQPILFLGTSISRSSHVRYSRIGSVRRIRRNKLGLRLEAPLDRIKKKLENSNFM

SKGKSSPKFLWLHNEHDQIILLYNATLRGFLNYYNFAHNYGRLASYLEYILKQSCAKL

LATKFKLGTMAKTYKKYGGRLTGNKGKSFLKPSYRITLKFLINPSPIVGSLFQEKTTA

TLDNLKCSLCE

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[secondary structure]

 

 

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