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Information of Th.e.I2-1 intron  (Format of information for each intron)

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

Note: Multiple Insertions

Th.e.I2-1    BA000039 (27972-28810)
Th.e.I2-2    BA000039 (294034-294872)
Th.e.I2-3    BA000039 (444772-445610)
Th.e.I2-4    BA000039 (520111-520949)
Th.e.I2-5    BA000039 (1148767-1149605)
Th.e.I2-6    BA000039 (1197582-1198420)
Th.e.I2-7    BA000039 (2082690-2083528)

[Intron sequence]

Sequence from Genbank entry.  Intron is identified in red.  The ORF
is identified in blue with start and stop codons underlined.  

5' end

                  gtgcgacgc gaaagctagc cagatgattg tcccactagc ccaacaagct
28021 agaacgggac cggttgttcc cccaaccgta gcctaaggag gcatgcgtga ctggtaacgg
28081 tcaggtatga agccctcccg acaatgaagc ccgaaccgga aggttggagc cgaatccgtg
28141 aggaggaagc aacttcacca gcgtcaggtg atagggagct aggcttgagg gtatggtgaa
28201 cgcaagtgaa gtgacgctag aagcctcgtt actccaagca ggccaaagat gctgataggc
28261 ctgagccaaa atggcaaagc ggattggatt cactgcttgc ttttcagtga acggggacag
28321 caactccgcc ggggtatagt caccacctaa cccctcgtgt catctggttg gaacgcggta
28381 agcccgtatc ttcgccttga acattcaagg caggcaaacc gtaaggaatg ctgatggggg
28441 tgcgggtaga ggaggtggga aaaagcgaat gctagcctgt aatgggctag atagggattg
28501 agaatgctgg caggacattc aacatcatcc cactcgaaag agggcagact tcccgccggt
28561 ccccccttac gagaaagtct atagaacctt cctaatggtg acaatgcaaa tggcggtgat
28621 cttgagtcac tggtgcggtc accaacctgc tcaaaaggta gagaggctgt agatgagtat
28681 cgtaaaggtt gcatgcacaa ccggttcctc ttaaatgagg ggtcctgggg ggctcgagcc
28741 ggatgcgggg aaacttgcac gtccggttcc tagggggcta gggggcagcg atgcccccct
28801 gctacccgac 

3' end  

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[Intron and flanking sequence]

27361 gccagatgat tgtcccacta gcccaacaag ctagaacggg accggttgtt cccccaaccg
27421 tagcctaggg aggcatgcgc gactggtaac ggtcaggtat gaagccctcc cgacaacgga
27481 gcccgaaccg aaaggttgaa gccgaatccg tgaggaggaa gcaactttgc cagcgtcagg
27541 cgatagggag ctaggcttga gggtatggtg aacgcaagtg aagtgacgcc agaagcctcg
27601 ttactataaa caggccaaag acgccgatag gcctgagcca aaatggcaaa cggactggtt
27661 tcactgctgt catctcagtg gacggggaca atagttccgt cggggtaaag tcaccaccta
27721 acccctcgcg tcatctggtt ggaacgcggt aagcccgtat cttcgccttg aacattcaag
27781 gcaggcaaac cgtaaggaat gctgatgagg gtgcgggtat gggatgcagg agaaagcgaa
27841 tgctggtctg taacggaccg gataggggtt gaggaaacaa tccaacatca ccccgcccga
27901 aagggagcag acttcctgct ggtctccctt tgcgagataa cctgtagaac ctcttgaatg
27961 gagacaaggc agtgcgacgc gaaagctagc cagatgattg tcccactagc ccaacaagct
28021 agaacgggac cggttgttcc cccaaccgta gcctaaggag gcatgcgtga ctggtaacgg
28081 tcaggtatga agccctcccg acaatgaagc ccgaaccgga aggttggagc cgaatccgtg
28141 aggaggaagc aacttcacca gcgtcaggtg atagggagct aggcttgagg gtatggtgaa
28201 cgcaagtgaa gtgacgctag aagcctcgtt actccaagca ggccaaagat gctgataggc
28261 ctgagccaaa atggcaaagc ggattggatt cactgcttgc ttttcagtga acggggacag
28321 caactccgcc ggggtatagt caccacctaa cccctcgtgt catctggttg gaacgcggta
28381 agcccgtatc ttcgccttga acattcaagg caggcaaacc gtaaggaatg ctgatggggg
28441 tgcgggtaga ggaggtggga aaaagcgaat gctagcctgt aatgggctag atagggattg
28501 agaatgctgg caggacattc aacatcatcc cactcgaaag agggcagact tcccgccggt
28561 ccccccttac gagaaagtct atagaacctt cctaatggtg acaatgcaaa tggcggtgat
28621 cttgagtcac tggtgcggtc accaacctgc tcaaaaggta gagaggctgt agatgagtat
28681 cgtaaaggtt gcatgcacaa ccggttcctc ttaaatgagg ggtcctgggg ggctcgagcc
28741 ggatgcgggg aaacttgcac gtccggttcc tagggggcta gggggcagcg atgcccccct
28801 gctacccgac aatgacggtg gaccaaacca ctggtgcagt caccaaccaa acggaaataa
28861 gctggcacag cataaactgg gccaaagcca accgtgaggt aaagaggctg caagtgcgta
28921 tcgcaaaggc tgtgaaggaa ggacgctggg gcaaagtgaa agctttgcaa tggctcctga
28981 cccactcgtt ctacggcaaa gcccttgccg tgaaacgggt aactgacaac tcaggcagta
29041 aaacacctgg tgtggatggg ataacctggt ccacacaaga gcagaaaacc caagccataa
29101 agtccctcag gagaagaggc tataagcccc aacccctgag gcgggtatat atcccgaaag
29161 caaacggcaa acagcgcccg ctaggaatcc cgacaatgaa ggacagggca atgcaggcac
29221 tatatgcact agccctagaa ccagtcgcgg aaaccacagc agaccggaac tcctatgggt
29281 tccgccgagg gcgatgtacg gcagatgcgg caggacaatg cttccttgct ctggcaagag
29341 ccaagtcggc tgaacacgtc cttgacgctg acatatccgg atgctttgat aacatcagcc
29401 atgagtggct actagccaac actccactgg acaaagggat cttacggaaa tggcttaaat

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[ORF sequence]

This intron is ORF-less. 

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[Secondary structure]

Essentially the same as Th.e.I1, please see the structure of Th.e.I1.

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