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Information of Th.e.I4-2 intron  (Format of information for each intron)

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

Note: Multiple Insertions
Th.e.I4-1    BA000039 (219750-220594)
Th.e.I4-2    BA000039 (2466031-2465187)
Th.e.I4-3    BA000039 (1040548-1041392)

[Intron sequence]

Sequence from Genbank entry (intron is on the antisense strand). 

The boundaries of the intron are marked as red and ORF is marked 

Intron on antisense strand

3' end

  1 gtcgggtagc aggggggcat tactgccccc tagcccccta agaaccggac gtgcaagttt 

 61 cctcgcatcc ggctcaggcc ccccaaaacc cctcatttaa gaggaaccgg ttgtgtgtac 

121 aacctttacg atactcatct acagcctgcc tacccttggt gggagggttg gtgaccgcac 

181 cagtgactca aggtcaccgc catttgcttt gtcaccatta gggaggttct atagattttc 

241 tcgtaatggg gaaccgacgg gaagtctgcc ctctttcgag tgggatgatg ttgaatgtcc 

301 tgccagcatt ctcaatccct atctaaccca ttacaggcta gcattcgctt tttcccgtct 

361 cctctacccg cacttccatg ggtgttcctc gcagtccact tgccttgtgc ttggcctatc 

421 aaggcggaag tacgggctta ccgcgttcca accagatgac gcgaggggtt aggtggtgac 

481 tttaccccgg tggagctaat gtccccgtac acctaattag gagaggtgta gccgtccact 

541 tgccattttg gcccaggcct gtcagcgtct ttggcctgct gagagtaacg aggcttctgg 

601 cgtcacttca cttacgttca ccataccctc aagcctagct ccctatcacc tgacgctggt 

661 gaagttgctt cctcctcacg gattcggctt caaccttgcg gttcgggcta cgttgtcggg 

721 agggcttcat acctgaccgt taccagtcac gcatgcctcc ctaggctacg gttgggggca 

781 caaccggtcc cgttctagct tgttgggcta gtgggacaat catctggcta gctttcgcgt 

841 cgcac

5' end  

Intron on sense strand

5' end 

  1 gtgcgacgcg aaagctagcc agatgattgt cccactagcc caacaagcta gaacgggacc 

 61 ggttgtgccc ccaaccgtag cctagggagg catgcgtgac tggtaacggt caggtatgaa 

121 gccctcccga caacgtagcc cgaaccgcaa ggttgaagcc gaatccgtga ggaggaagca 

181 acttcaccag cgtcaggtga tagggagcta ggcttgaggg tatggtgaac gtaagtgaag 

241 tgacgccaga agcctcgtta ctctcagcag gccaaagacg ctgacaggcc tgggccaaaa 

301 tggcaagtgg acggctacac ctctcctaat taggtgtacg gggacattag ctccaccggg 

361 gtaaagtcac cacctaaccc ctcgcgtcat ctggttggaa cgcggtaagc ccgtacttcc 

421 gccttgatag gccaagcaca aggcaagtgg actgcgagga acacccatgg aagtgcgggt 

481 agaggagacg ggaaaaagcg aatgctagcc tgtaatgggt tagataggga ttgagaatgc 

541 tggcaggaca ttcaacatca tcccactcga aagagggcag acttcccgtc ggttccccat 

601 tacgagaaaa tctatagaac ctccctaatg gtgacaaagc aaatggcggt gaccttgagt 

661 cactggtgcg gtcaccaacc ctcccaccaa gggtaggcag gctgtagatg agtatcgtaa 

721 aggttgtaca cacaaccggt tcctcttaaa tgaggggttt tggggggcct gagccggatg 

781 cgaggaaact tgcacgtccg gttcttaggg ggctaggggg cagtaatgcc cccctgctac 

841 ccgac

3' end 

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[Intron and flanking sequence]

   1 agaccagcac gccattgcca tagtcgcgac tattgtcaaa gggaatcgtt tcctcgtttt 

  61 gggggacagg gtgccagtag cccgactgct cccgcatcaa caatttcaac tcggatttcg 

 121 tccccataaa accggttttt ttaatcactt cagcgagata ctgcacagcc cttgacctct

 181 accctaatgc tcagactgac acacaactag aacaggcaac aaccgtaaga acacctatga 

 241 cggattggcg ctgatgaagg atgcaactgt tgggttgtcc gcgatcgctg gaatccagaa 

 301 gtcgggtagc aggggggcat tactgccccc tagcccccta agaaccggac gtgcaagttt 

 361 cctcgcatcc ggctcaggcc ccccaaaacc cctcatttaa gaggaaccgg ttgtgtgtac 

 421 aacctttacg atactcatct acagcctgcc tacccttggt gggagggttg gtgaccgcac 

 481 cagtgactca aggtcaccgc catttgcttt gtcaccatta gggaggttct atagattttc 

 541 tcgtaatggg gaaccgacgg gaagtctgcc ctctttcgag tgggatgatg ttgaatgtcc

 601 tgccagcatt ctcaatccct atctaaccca ttacaggcta gcattcgctt tttcccgtct 

 661 cctctacccg cacttccatg ggtgttcctc gcagtccact tgccttgtgc ttggcctatc 

 721 aaggcggaag tacgggctta ccgcgttcca accagatgac gcgaggggtt aggtggtgac 

 781 tttaccccgg tggagctaat gtccccgtac acctaattag gagaggtgta gccgtccact 

 841 tgccattttg gcccaggcct gtcagcgtct ttggcctgct gagagtaacg aggcttctgg 

 901 cgtcacttca cttacgttca ccataccctc aagcctagct ccctatcacc tgacgctggt 

 961 gaagttgctt cctcctcacg gattcggctt caaccttgcg gttcgggcta cgttgtcggg 

1021 agggcttcat acctgaccgt taccagtcac gcatgcctcc ctaggctacg gttgggggca

1081 caaccggtcc cgttctagct tgttgggcta gtgggacaat catctggcta gctttcgcgt

1141 cgcaccccta tatctttatt aaacaccgat ccgtaagagt tcatcagttg cctgaatcac 

1201 tcggtcagac actggagaat tccaaggcca agggggctga actatttgtc agtataggga 

1261 aaggcagcct gccgccctca ctaatcgtca atgacagcgg gcatccaagg ttgttgcggc 

1321 aaaaaggcgc gatcgcacgg cagtggggca atgggttctg tcagcgtaaa acgaccactc 

1381 tgaatccaat ccttgaggac ctcagctatg cgctggctaa aatagagact agtgagggga 

1441 gcggt

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[ORF sequence]

This intron is ORF-less.

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[Secondary structure]

Essentially the same as Th.e.I1, please see the structure of Th.e.I1.

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